Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs72749737 chr1:204158927 G/A 3.61E-5 502 22.48 24.35 7.18 KM Plot
LGG rs72749749 chr1:204167398 C/T 8.37E-6 499 22.67 21 7.18 KM Plot
LGG rs72749753 chr1:204171329 A/G 5.74E-6 497 22.67 21 7.18 KM Plot
LGG rs72749756 chr1:204175367 C/T 6.68E-6 491 22.8 21 7.18 KM Plot
LGG rs72778215 chr10:910779 G/T 2.44E-10 508 21.77 24.5 13.8 KM Plot
LGG rs72778228 chr10:938435 A/G 2.33E-6 503 21.7 25.18 14.47 KM Plot
LGG rs73001065 chr19:19460541 G/C 1.78E-5 504 21.7 27.97 15.05 KM Plot
LGG rs73068290 chr3:194784530 G/A 4.06E-6 500 21.1 26.23 5.17 KM Plot
LGG rs73074254 chr3:194801044 G/A 3.65E-7 489 21.05 27.53 5.17 KM Plot
LGG rs73234861 chr7:127277449 T/C 1.01E-5 507 21.6 26.77 12.4 KM Plot
LGG rs73234862 chr7:127281957 G/T 9.37E-6 506 21.6 26.4 12.4 KM Plot
LGG rs73234876 chr7:127293119 G/C 5.22E-5 505 21.7 27.13 9.73 KM Plot
LGG rs732647 chr6:53122053 G/A 3.23E-5 506 22.57 21.55 14.8 KM Plot
LGG rs73310445 chr5:168986148 T/C 1.63E-8 506 22.37 23.85 6.83 KM Plot
LGG rs73312479 chr5:169008390 C/A 1.62E-8 506 22.57 23.25 6.83 KM Plot